3-D Structure Analysis-Contact Maps

Contact Maps

CMAPpro

Scratch Protein Predictor metaserver.

http://scratch.proteomics.ics.uci.edu/

XXStout

Distill metaserver.

http://distill.ucd.ie/distill/

NNcon

NNcon: Protein Contact Map Prediction Using Artificial Neural Networks.

http://casp.rnet.missouri.edu/nncon.html

SPINE-2D

Contact Map Prediction

http://sparks.informatics.iupui.edu/SPINE-2D/spine-2d.html

Solvent Accessibility

SPPIDER

Solvent accessibility based Protein-Protein Interface iDEntification and Recognition.

http://sppider.cchmc.org/

SABLE

Accurate sequence-based prediction of relative Solvent AccessiBiLitiEs, secondary structures and transmembrane domains for proteins of unknown structure.

http://sable.cchmc.org/

GETAREA

Calculation of Solvent Accessible Surface Areas, Atomic Solvation Energies and Their Gradients for Macromolecules.

http://curie.utmb.edu/getarea.html

POPS

POPS is a fast algorithm to calculate solvent accessible surface areas (SASAs) of proteins and nucleic acids at atomic (default) and residue (coarse-grained) level.

http://mathbio.nimr.mrc.ac.uk/wiki/POPS

ASAP

ASAP predicts solvent accessible surface area of proteins.

http://ccb.imb.uq.edu.au/ASAP/

ASA-View

This server provides graphical representation of solvent accessibility of amino acid residues in proteins, with known structures.

http://gibk26.bse.kyutech.ac.jp/jouhou/shandar/netasa/asaview/